PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G008900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 522aa    MW: 58641.5 Da    PI: 6.5804
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G008900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-09415462448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          WT  E  +l+d+++q+G+g+W+ I + +      Rt+ +++++w+++l
  Manes.08G008900.1.p 415 WTLSEVMKLIDGIAQYGTGRWTDIKKLLFsssAYRTPVDLRDKWRNLL 462
                          ********************************99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-13404466IPR009057Homeodomain-like
PROSITE profilePS5129413.846407466IPR017930Myb domain
SMARTSM007173.1E-9411464IPR001005SANT/Myb domain
CDDcd116601.71E-17413463No hitNo description
SuperFamilySSF466896.36E-16413471IPR009057Homeodomain-like
PfamPF002497.9E-8415462IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MKCQRVKVDE SFVPSVEGKA VEVQPLLAES KPDHTSIDGD AWKHLDIEDF SYGFEYGLKR  60
NYGGLDCNTT QGQDELEFGV LDGLLDEVDE VDDIHAANDI SRACEEFLLD VELAEKISDL  120
DCAPLGRLHF GDSSSESQSP GFSGSSNGVH GLSESSIAVV TDSECKIGVE NKTVKCELND  180
SSGDNWDYQA PENVFTTTHD LENLDEVDDA KPESGMSSDD NAKKPVQASN LRQKRFRKPT  240
LRYIEEFSVP KSRHAMERQK NLTADSRVIS LTIRSHDEHL GGSVTLTKEE SLSEIITQET  300
LDDDEKLSDL KSKCINRRQK FPSPASKDKC LKTESHNELN LVRGFKSVPR EGSFTGTSTQ  360
ASFESCPQRG RPKKRPYVPV PESDNEDAAS ESEGDNAKRR KSKKSADRRK HQRMWTLSEV  420
MKLIDGIAQY GTGRWTDIKK LLFSSSAYRT PVDLRDKWRN LLRASSVQKQ KLKQNKKEVD  480
QKLKHAMRPL PKSVICRILE LATVHPYPRF TPGGRYIRRK N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222237KKPVQASNLRQKRFRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082384.10.0PREDICTED: uncharacterized protein LOC105642236 isoform X1
RefseqXP_012082383.10.0PREDICTED: uncharacterized protein LOC105642236 isoform X1
RefseqXP_012082382.10.0PREDICTED: uncharacterized protein LOC105642236 isoform X1
RefseqXP_012082381.10.0PREDICTED: uncharacterized protein LOC105642236 isoform X1
RefseqXP_012082380.10.0PREDICTED: uncharacterized protein LOC105642236 isoform X1
TrEMBLA0A067JZ120.0A0A067JZ12_JATCU; Uncharacterized protein
STRINGPOPTR_0006s12820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-22TRF-like 6